------------------------------------------------------ Amber 5 NUCGEN UCSF 1997 ------------------------------------------------------ INPUT MOLECULES INFORMATION NUC 1 MOLECULE 1 CONTAINS 10 RESIDUES: A5 A A A A A A A A A3 NUC 2 MOLECULE 2 CONTAINS 10 RESIDUES: T5 T T T T T T T T T3 New (1994) residue naming convention GENERATING RIGHT HANDED BDNA (ARNOTT) reading monomer parameters