A recent review can be found in:
- D. Bashford and D.A. Case. Generalized Born models of
macromolecular solvation effects. Annu. Rev. Phys. Chem. 51,
129-152 (2000).
For more technical details of the way GB is implemented in Amber, one may start with:
- V. Tsui and D.A. Case.
Theory and applications of the generalized Born solvation
model in macromolecular simulations.
Biopolymers (Nucl. Acid Sci.) 56, 275-91 (2001).
- A. Onufriev, D. Bashford and D.A. Case. A modification of the
generalized Born model suitable for macromolecules. J. Phys.
Chem. 104, 3712-3720 (2000).
- V. Tsui and D.A. Case. Molecular dynamics simulations of nucleic
acids using a generalized Born solvation model. J. Am. Chem. Soc.
122, 2489-2498 (2000).
- B. Jayaram, D. Sprous and D.L. Beveridge. Solvation free energy of
biomacromolecules: Parameters for a modified
generalized Born model consistent with the AMBER force field.
J. Phys. Chem. B 102, 9571-9576 (1998).